Exakat\Reports\Clustergrammer::generate PHP Method

    public function generate($folder, $name = 'txt')
    {
        $config = Config::factory();
        $themes = $config->thema;
        $analyzers = array();
        foreach ($themes as $theme) {
            $analyzers[] = Analyzer::getThemeAnalyzers($theme);
        }
        $analyzers = call_user_func_array('array_merge', $analyzers);
        display(count($analyzers) . " analyzers\n");
        $res = $this->sqlite->query('SELECT distinct analyzer FROM results WHERE analyzer IN ("' . implode('","', $analyzers) . '") ORDER BY analyzer');
        $skeleton = array();
        while ($row = $res->fetchArray(SQLITE3_ASSOC)) {
            $skeleton[$row['analyzer']] = 0;
        }
        display(count($skeleton) . " distinct analyzers\n");
        $titles = array();
        foreach ($skeleton as $analyzer => $foo) {
            if ($analyzer == 'total') {
                continue;
            }
            $ini = parse_ini_file($this->config->dir_root . '/human/en/' . $analyzer . '.ini');
            $titles[$analyzer] = '"' . $ini['name'] . '"';
        }
        $all = array();
        $res = $this->sqlite->query('SELECT * FROM results WHERE analyzer IN ("' . implode('","', $analyzers) . '") ORDER BY file');
        $total = 0;
        while ($row = $res->fetchArray(SQLITE3_ASSOC)) {
            if (!isset($all[$row['file']])) {
                $all[$row['file']] = $skeleton;
            }
            ++$all[$row['file']][$row['analyzer']];
            ++$total;
        }
        display($total . " issues read\n");
        $txt = " \t" . implode("\t", array_values($titles)) . "\n";
        foreach ($all as $file => $values) {
            $txt .= "{$file}\t" . implode("\t", array_values($values)) . "\n";
        }
        file_put_contents($folder . '/' . $name . '.' . self::FILE_EXTENSION, $txt);
        display(count($all) . " issues reported\n");
        print "Upload " . $name . '.' . self::FILE_EXTENSION . " on http://amp.pharm.mssm.edu/clustergrammer/\n";
    }