public function loadStageTwo($magentoRootFolder, $loadExternalConfig = true, $magerunStopFileFolder = '')
{
$config = $this->_initialConfig;
$config = $this->loadDistConfig($config);
if ($loadExternalConfig) {
$config = $this->loadPluginConfig($config, $magentoRootFolder);
$config = $this->loadSystemConfig($config);
$config = $this->loadUserConfig($config, $magentoRootFolder);
$config = $this->loadProjectConfig($magentoRootFolder, $magerunStopFileFolder, $config);
}
$this->_configArray = $config;
}