alexia\mar\main::run PHP Method

    private function run()
    {
        $issues = [];
        $totalFiles = 0;
        $totalLines = 0;
        $filePath = $this->scanner->getCurrentFilePath();
        if (!$this->options->getOption('t') || in_array('syntax', $this->options->getOption('t'), true)) {
            $checkSyntax = true;
            $versionGood = $this->tests->getPHPVersion();
            if (!$versionGood) {
                $this->reporter->add("ERROR!  Syntax checking was selected and a PHP binary lower than 7.0.0-dev was specified.", 0, 1);
            }
        } else {
            $checkSyntax = false;
        }
        while (($lines = $this->scanner->scanNextFile()) !== false) {
            $totalFiles++;
            //Check syntax and assign a line to grab if needed.
            $grabLineNumber = null;
            $grabLine = null;
            if ($checkSyntax) {
                $syntax = $this->tests->checkSyntax($filePath);
                if (!isset($syntax['is_valid'])) {
                    $grabLineNumber = $syntax['line'];
                }
            }
            foreach ($lines as $index => $line) {
                $lineNumber = $index + 1;
                $line = trim($line, "\r\n");
                if ($lineNumber == $grabLineNumber) {
                    $grabLine = $line;
                }
                $totalLines++;
                $issues = $this->tests->testLine($line);
                foreach ($issues as $section => $tests) {
                    foreach ($tests as $test => $true) {
                        $this->reporter->addToSection($section, $test, $filePath, $lineNumber, $line);
                    }
                }
            }
            if ($checkSyntax && $grabLine !== null) {
                $this->reporter->addToSection('syntax', 'syntax', $filePath, $grabLineNumber, $grabLine . ' //' . $syntax['error']);
            }
            $filePath = $this->scanner->getCurrentFilePath();
        }
        $this->reporter->add("Processed {$totalLines} lines contained in {$totalFiles} files.", 0, 1);
    }